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MGG:MGGで次世代シーケンサデータのde novo アセンブルは可能ですか?
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MGG:MGGで次世代シーケンサデータのde novo アセンブルは可能ですか?
MGG:MGGで次世代シーケンサデータのde novo アセンブルは可能ですか?
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akr
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MGG:MGGで次世代シーケンサデータのde novo アセンブルは可能ですか?
07 Nov 2010 07:03
#
次世代シークエンサー(454, illmina genome analyzer)から得られた配列をGUI
上でde novoアッセンブルできるソフトを探しています。MGGプロフェッ
ショナル版とInsilicoAssemblerはこの目的で利用できますで しょうか。
2010/11/5 「Y研究所Tさんからの質問」代理投稿しました。-Forum Administrator-
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akr
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Re:
454はある程度可能です。Illuminaのアセンブルはできません。
07 Nov 2010 07:05
#
MGGPW(MGGP+ISASM)では、454の長塩基配列のアセンブルはある程度可能(20万件程度)ですが、
Illumina等の短塩基長のアセンブルはできません。
GenomeTravelerには近日中に(おそらく2ヶ月以内に)いくつかのパブリックな
Short Read de novo Assemblerを内部的に起動してGUIで操作できるにする予定です。
-MGG Developer-
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