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in silico biology, inc.

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Recent Updates

IMC i04 新旧ライゲーション機能の比較
Notice of New Server Deployment
IMC Version 9.0.70 Release Notes
IMC Version 8.135 Release Note
IMC Version 8.133 Release Note
IMC E03A Overviews on Pattern Search
IMC i02P Primer Modification
IMC Version 8.130 Release Note

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Special Notices

about macOS 11 Big Sur
Dongle driver for macOS 10.14, 15 has been released
IMC Version 8.127 Release Note
IMC Version 8.128 Release Note
IMC Version 8.129 Release Note

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License Activation
- Dongle License (HW Key)
- Software Key Licebse(SW Key), Activation License, Trial License
Function Overviews and Basic Operation
Work Bench
Feature Map
Feature Key and Feature
Sequence and Data Input and Output
Genome / Sequence Viewer / Editor
Search Sequence and Annotation
Cloning
Sequencing
Gene and Genome Sequence Analysis
Genome Annotation
Genome Comparison
Genome Mapping
Expression Analysis
Metabolome Analysis
- Local Pathway Builder
- Genome Scale Model
Genome Design
Settings
- Installation
- Parameter Settings
Tools
Window and Dialog Description
What is "Do It Yourself" Genome Analysis Software?
Functions and Operations of GenomeTraveler

Function Menu

DATABASE MANAGEMENT
GENOME ANNOTATION
GENOMECOMPARISON
GENOME MAPPING
EXPRESSION ANALYSIS
METABOLOME ANALYSIS
GENOME DESIGN
SETTINGS
TOOLS

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Trouble Shooting Article Count: 22

Various trouble shooting methods are explained.

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Notice of New Server Deployment
IMC i04 新旧ライゲーション機能の比較
IMC Version 9.0.70 Release Notes

Product Release News

IMC Version 9.0.70 Release Notes
IMC Version 8.132 Release Note
IMC Version 8.111 Release Note
IMC V868 IMC Version 8.68 released
IMCV845: IMC Version 8.45 is released.
IMCV838: IMC Version 8.38 released
IMC Ver. 7.47 is released (Java No Check Version)
IMC Ver. 7.46 is released

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Recent Updates

IMC i04 新旧ライゲーション機能の比較
Notice of New Server Deployment
IMC Version 9.0.70 Release Notes
IMC Version 8.135 Release Note
IMC Version 8.133 Release Note
IMC E03A Overviews on Pattern Search
IMC i02P Primer Modification
IMC Version 8.130 Release Note
IMC Version 8.129 Release Note
IMC Version 8.132 Release Note
IMC Version 8.128 Release Note
IMC Version 8.127 Release Note
IMC Version 8.126 Release Note
IMC O04 Venn Diagram Overviews
IMC L01B Load Related Genome to Reference Map, Auto Generation of DB
IMC i03A execute PCR
IMC i06E Extrace Band from Gel
IMC i03B Register Priming Site as a Feature
IMC i02J Primer Desing for In-Fusion PCR
IMC Version 8.125 Release Note

Function Menu

License Activation
- Dongle License (HW Key)
- Software Key Licebse(SW Key), Activation License, Trial License
Function Overviews and Basic Operation
- Launch IMC
- IMC Primer
- Terminate IMC
- Launch GT
- GT Primer
Work Bench
- Work Bench Structure
- Directory Tree
- Menubar
- Toolbox
Feature Map
- Feature Layout Style
- Sequence Lane
- Feature Lane
- Content Profile Lane
- Navigation Lane
- Restriction Enzyme Map Lane
- LGRmap Lane
- Frame Lane
- Expression Profile Lane
- Other Lanes
Feature Key and Feature
- Management and Operations of Feature Keys
- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output
- Load Sequence
- Save Sequence as File
- Import and Data Mapping on Sequence
- Data Extract from Sequence and Export
- Data Conversion
- Application Data File Operation
Genome / Sequence Viewer / Editor
- GenBank EMBL Viewer
- Sequence Viewer
- Annotation Viewer
- Multiple Genome Viewer (Linear Map)
- Circular Genome Viewer-Designer
- Plasmid Map Viewer-Designer
- Trace Viewer - Editor
- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
- Phylogenetic Tree Viewer
- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation
- Search Common Operations
- Feature Key Search
- Keyword Search
- Pattern Search
- Homology Search
- Priming Site Search
- SNP Search
- Batch Homology Search
Cloning
- Cloning in silico
- Restriction Enzyme
- Primer Design
- PCR Reaction
- Bridge Contigs
- Ligation
- Plasmid Map Operations
- Gel Electrophoresis
- Fragment Modification
- Find RE Set for Insert Check
- Homologous Recombination
- Pseudo Cloning
Sequencing
- Assembly
- Quality Control of Reads
- Finishing
Gene and Genome Sequence Analysis
- DNA Content Analysis
- Codon Analysis
- ORF Analysis
- Translation
- Amino Acid Profile Analysis
- Amino Acid Motif Analysis
Genome Annotation
- Database Management
- Auto Annotation
- Tools for Genome Annotation
- External Annotation Server
- Tools for Manual Annotation
- Organization and Submission Tools for Annotation
Genome Comparison
- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
- Multiple Circular Genome Map
- Dot Plot Analysis
- Venn Diagram Analysis
- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
Genome Mapping
- Feature Mapping
- EST Mapping
- Trace Mapping
- SNP Mapping
- Amino Acid Sequence Mapping
- Array Probe Mapping
- NGS Read Mapping
Expression Analysis
- Tiling Array Probe Design
- Probe Mapping
- Import Expression Data File
- Expression Profile Lane Operation
- Expression Data Correction
- Gene Level Operations
- Inter-Array Arithmetic
- Peak Detection
- BLAST Search Result Mapping
- Correlation Plot between Arrays
- Gene Expression Clustering
- Feature Expression Statistics
Metabolome Analysis
- Local Pathway Builder
- Genome Scale Model
Genome Design
- Reverse Complement
- Homologous Recombination Design
- Gene Cluster Design
- Check Gene Cluster
- OGAB Fragmentation Design
Settings
- Installation
- Parameter Settings
Tools
- in silico Assembler
- iSpider
- TaxiSpider
- ARM
- ARM Interactive
- Pair2Fragment
- GenBank GBFF Expander
- GenBank File Checker
Window and Dialog Description
- Major Window
- Execution Dialog
- Parameter Setting Dialog
- Result Display Dialog
What is "Do It Yourself" Genome Analysis Software?
Functions and Operations of GenomeTraveler
- Data Management and Project Management
- NGS Data Pre-Processing
- NGS Read de novo Assembly
- NGS Read Mapping
- Alignment Viewer
- Secondary Analysis (Expression Analysis)

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