Please reduce process time of GT's short reads mapping!

AgentUser
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12 6月 2011 22:59 #627 by AgentUser

Please reduce process time of GT's short reads mapping! was created by AgentUser

GT's short reads mapping process time is rather longer than other software like BWA. Is it possible to shorten the mapping time?

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akr
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13 6月 2011 19:29 #628 by akr

Replied by akr on topic Our mapping methods are based on the Blast algorithm, so it depends on the blast speed.

Our mapping methods are based on the Blast algorithm, so it depends on the blast speed.
However, we will try to reduce the mapping time with considering possible improvements.

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