Genome Analysis Software Info Site
Official Technology Information Site of in silico biology, inc.
Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
Dongle License (HW Key)
IMC Primer
Terminate IMC
Toolbox
Feature Key Search
Keyword Search
Pattern Search
Priming Site Search
Batch Homology Search
Restriction Enzyme
Primer Design
PCR Reaction
Ligation
Gel Electrophoresis
Fragment Modification
DNA Content Analysis
Codon Analysis
ORF Analysis
Database Management
Reverse Complement
Circular Genome Viewer-Designer
Circular Genome Map (Circular Genome Map) is a function to compare and draw Features and Contents from arbitrary genomic chromosomes or genomic chromosomes of closely related species and arbitrary numerical data specific to genome position on concentric circles.
You can display distribution status of each gene such as genes of each genomic chromosome, change of base composition, etc.
The order of concentric circles of features and content profiles to be placed can be changed arbitrarily.
Drawing parameter setting can be changed for each concentric circle.
It is also possible to change the diameter of the circular genome map and the printing parameters.
For printing a circular genome map, in addition to direct printing, you can output files in PDF, PNG, and EMF formats.
A large number of features drawn on the concentric circle of the circular genome map can be classified and displayed in different colors depending on the annotation type if there are annotations.
- Circular Feature Lane Different Feature drawing independent color setting is possible.
- Feature Key Draw with different colors.
- When Color Qualifier is set, draw the CDS Feature with the specified color.
- Draw the CDS Feature with the color specified in the Classification code.
- Draw the CDS Feature with color derived from EC Nubmer.
- Draw the CDS Feature with the color specified in the Category code.
- Draw the CDS Feature with the color specified in Blast's score range.
Sequence files drawn on the circular genome map are referenced in the order shown in the main current directory. For this reason it is easy to manipulate drawing a number of different circular genome sequences in the same format.
By clicking on a part of the circular genome map it is possible to display the area of the corresponding main feature map.
In the circular genome map, the sequence file name and total base length (when single genomic chromosome) are drawn at the center, and the base number scale is displayed around it.
The starting position base of the scale can also be changed.
The map layout can be registered as a layout style, and the registered circular genome layout style can be called later.