Genome Analysis Software Info Site
Official Technology Information Site of in silico biology, inc.
Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
Dongle License (HW Key)
IMC Primer
Terminate IMC
Toolbox
Feature Key Search
Keyword Search
Pattern Search
Priming Site Search
Batch Homology Search
Restriction Enzyme
Primer Design
PCR Reaction
Ligation
Gel Electrophoresis
Fragment Modification
DNA Content Analysis
Codon Analysis
ORF Analysis
Database Management
Reverse Complement
Probe Design
Automatically design tiling array probes.
You can specify the probe base length.
You can specify the distance (base number) between the leading bases of each probe.
You can specify the strand to design the probe (Forward Strand, Reverse Strand, Both). Probes can be designed avoiding specified annotations (feature keys) such as rRNA.
If there is any annotation at the position where the probe was designed, it is possible to capture its contents.
An arbitrary initial letter (prefix) and a sequential number of the specified number of digits can be specified for the probe name.
Currently it is possible to output in three different formats.
- Agilent Simple Format: Agilent Simple Format is a comma-separated CSV format of 2 columns per row consisting of ProbeID and Sequence.
- Agilent Complete Format: The Agilent Complete Format is a comma separated CSV format of 7 columns per probe consisting of ProbeID, Sequence, TargetID, Accessionns, GeneSymbols, Description and ChromosomalLocation.
- IMC Standard CSV Format: IMC Starndard CSV Format is a Comma Separated Probe Description CSV Format of 5 columns per row of 1 probe standardly used by IMC.
This function can be executed with the following edition.
AE
, DS
, GT