in silico biology, com - Pattern Search

Pattern Search

Select multiple registered array patterns and detect patterns existing in the current array.
It is also possible to search by entering new patterns when searching.
The search range can be specified and the search target strand can also be specified.
Mismatch detection of 1 to 2 letters is possible.
You can also specify the search region of the CDS region or intergenic region.
It is possible to search only upstream / downstream designated areas of CDS.
In addition, multiple arrays can be set as search targets.
On the search results screen, you can display the detected number, the position on the sequence, and the genes upstream and downstream for each pattern.
In addition, results can be automatically registered as new features.
The result can be output as file in CSV / FastA format.
When you click on a row in the search result list, the main feature map moves so that the position of the pattern is at the center of the map, and the corresponding pattern array on the array lane is highlighted.

List of articles in category Pattern Search
Title	Modified Date	Hits
IMC E03A Overviews on Pattern Search	16 January 2025	Hits: 66
IMC E03D Search Amino Acid Pattern on CDS of Genome	16 August 2019	Hits: 1528
IMC E03E Pattern Search Using Unregistered Pattern	16 August 2019	Hits: 872
IMC E03F Register New Pattern Found on Genome Sequence	16 August 2019	Hits: 1632
IMC E03G Register Found Pattern as New Feature	16 August 2019	Hits: 1571
IMC E03C Search Sequence Pattern from Intergenic Region	22 February 2019	Hits: 2500
IMC E03B Register Nucleic Acid or Amino Acid Sequence Pattern	22 February 2019	Hits: 3135
IMC W717 Amino Acid Profile Tab Pane Description	12 December 2018	Hits: 3865
IMC W33A Amino Acid Profile's Motif List Setting Dialog	07 November 2018	Hits: 3987