Genome Analysis Software Info Site
Official Technology Information Site of in silico biology, inc.
Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
Dongle License (HW Key)
IMC Primer
Terminate IMC
Toolbox
Feature Key Search
Keyword Search
Pattern Search
Priming Site Search
Batch Homology Search
Restriction Enzyme
Primer Design
PCR Reaction
Ligation
Gel Electrophoresis
Fragment Modification
DNA Content Analysis
Codon Analysis
ORF Analysis
Database Management
Reverse Complement
Restriction Enzyme
With the restriction enzyme function of IMC, if annotation (Feature) is added to the original DNA base sequence, it can be fragmented with the annotation kept.
If one feature is divided by a restriction enzyme, its feature itself is inherited, but in some circumstances the feature key may be changed automatically.
The terminal shape of restriction enzyme digested fragments is preserved correctly. By doing this, we check whether ligation is possible when ligation between pieces is done.
In E. coli, it can be checked whether the methylation site affects restriction enzyme digestion.
It is also possible to register frequently used restriction enzymes as a set.
It is also possible to register newly provided restriction enzymes or delete restriction enzymes that are no longer used.
Restriction enzyme management
- Partial set selection,
- Filtering by type
- Distinction of the number of recognized bases
- Palindromic
- Distinction between smooth and protruding ends
- Presence / absence of DAM / DCM
- Difference depending on the number of cutting points
- Alias names of restriction enzymes list can be saved, list editing is possible.
- You can also register enzymes, edit enzymes, delete enzymes.
Search function of restriction enzyme recognition site
- Search area selection,
- Recognition site search,
- Recognition site list display,
- Restriction map display,
- Collective search from multiple sequences