Amino Acid Sequence Mapping
Map the amino acid sequence on the reference genome base sequence and register it as a new feature.
It maps the specified amino acid sequence (s) to the reference genome currently displayed as a feature map and registers the hit entry as a new feature (such as mRNA).
For the mapping, the tBlastN algorithm is used.
Mapping results are classified into three types.
- When the input amino acid perfectly matches the reference genome base sequence
- When the input amino acid incompletely matches the reference genome base sequence
- When the input amino acid sequence does not match at all
Results of the former two types can be registered as new features on the reference genome. For example, a perfect match sequence can be registered as an mRNA feature and incomplete match sequences can be registered as miscRNA features.
You can set the same Value for any Qualifier of the newly registered feature. In addition, it is possible to register sequential numbers starting with arbitrary numbers, with the prefix specified in Qualifier / locus_id and any number of digits.
In the case of a eukaryote with an intron, it is registered as a feature by identifying the exon-intron region.
You can limit the maximum base length of introns.