Genome Analysis Software Info Site
Official Technology Information Site of in silico biology, inc.
Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
Dongle License (HW Key)
IMC Primer
Terminate IMC
Toolbox
Feature Key Search
Keyword Search
Pattern Search
Priming Site Search
Batch Homology Search
Restriction Enzyme
Primer Design
PCR Reaction
Ligation
Gel Electrophoresis
Fragment Modification
DNA Content Analysis
Codon Analysis
ORF Analysis
Database Management
Reverse Complement
Sequencing
Information on large-scale sequencing by NGS and sequencing by conventional capillary sequencer.
Data analysis of NGS can be executed with GenomeTraveler.
Capillary sequencing Data analysis can be performed with IMC.
Subcategories
Assembly 0
The lead sequences from the sequencer are linked to each other using homology to generate a consensus sequence.
There are large lead assembly from NGS and assembly from capillary sequencer.
Assembly of NGS leads can be done in GenomeTraveler.
The lead assembly from the capillary sequencer can be executed with the IMC tool in silico Assembler.
Nanopore related assemblies can be launched from GenomeTraveler.
NGS Read Assembly 0
It is a function to assemble the reads from the next generation sequencer (NGS).
Velvet and OASES are implemented.
This function is implemented on the following edition.
GenomeTraveler
Nanopore Read Assembly 0
Assemble Reads from Nanopore Seqeuncer.
canu and miniasm are implemented.
This function can be executed with the following edition.
GenomeTraveler
Assembly of Reads from Capillary Sequencer 0
Assembly function of Read from capillary sequencer.
This function is implemented in the following edition.
IMCGE
, IMCAE
, IMCDS
, GenomeTraveler
Quality Control of Reads 0
We will control the quality of the lead from the sequencer.
We will trim out areas that are not accurate, eliminate leads that are totally inaccurate, and improve assembly accuracy.
Finishing 0
Finishing function which is the final phase of genome sequencing is explained.