Open Reading Frame Analysis
IMC provides a simple ORF candidate extraction function.
Extracts on the 6 frames of the current base sequence those having a length equal to or longer than the base length specified in the region from the stop codon to the next stop codon.
ORF candidates can be converted to CDS and amino acid translation can also be performed.
When the ORF candidate region encompasses other ORF candidate regions, one with a larger base length can be adopted.
In IMC, in addition to this, you can launch the Gene Finding programs Augustus and MetaGenome Annotator as external commands and capture the results.
In addition, you can import the output result of a gene identification program such as Glimmer and map it on the current sequence.