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There are the following methods to launch IMC.
There are the following methods to launch IMC.
There are the following methods to launch GT.
Double click the desktop icon
Launch from the start menu (Windows)
Launch from the command prompt (Windows)
Launch from Terminal (Mac)
There are the following ways to terminate IMC.
The following operations are often used in IMC.
Please visit when using IMC for the first time.
Please read the following when using GenomeTraveler (GT) for the first time.
Sample data will be installed automatically when GT is started for the first time.
Using this sample data, you can practice the operation.
If sample data is not displayed, confirm the demo directory and change it to the root directory and it will be displayed.
Sample data includes the following.
Contains the result of importing the BAM file used for assembly and mapping. Each fragment of the BAM file can be viewed with the Alignment Viewer.
The reference genomic data and the result of mapping NGS lead using LAST on its genome are stored. You can browse and analyze the reference genome data by activating the IMC, and you can view and analyze the mapping by starting the Alignment Viewer. It is also possible to execute new mapping using the same NGS data.
Contains the AFG file of assembly result of NGS lead using OASES. Convert this to a BAM file and start the Alignment Viewer. It is also possible to use the same lead and execute a new assembly.
contains reference genomic data and results mapped using SLIDESORT on its genome. You can browse and analyze the reference genome data by activating the IMC, convert the mapping result to a BAM file, and view and analyze it with the Alignment Viewer. It is also possible to execute new mapping using the same NGS data.
The AFG file of assembly result of NGS lead is stored using Velvet assembler. Convert it to BAM file and start up Alignment Viewer. It is also possible to use the same lead and execute a new assembly.