Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
Dongle License (HW Key)
IMC Primer
Terminate IMC
Toolbox
Feature Key Search
Keyword Search
Pattern Search
Priming Site Search
Batch Homology Search
Restriction Enzyme
Primer Design
PCR Reaction
Ligation
Gel Electrophoresis
Fragment Modification
DNA Content Analysis
Codon Analysis
ORF Analysis
Database Management
Reverse Complement
Global Genome Rearrangement Analysis
Drawing window for global genome rearrangement map. Genomic sequences that are closely related to each other are represented in a straight line at the top and bottom. Many colored line segments that connect the upper and lower line segments are highly homologous in the upper and lower genomes. The color of the line connecting the top and bottom shows the difference in the strength of homology. The line that gathers at one point in the center indicates that this basin is inverted in each other's genome. A small window in the center shows what is displayed when you zoom in on the whole in the navigation window. Screen display and output can be set with the button tools at the top and bottom.
This feature is implemented in the following software editions
- IMCGE
IMCAE
IMCDS
GenomeTraveler
Overview and functions
Create and draw a genome rearrangement map across the entire length of related species genomes at the feature level.
Compares the total genome length pairwise between the current genome sequence and the selected (several) genome sequences among the related species genome sequences loaded in the current reference directory.
Comparisons with nucleic acid sequences and amino acid sequences are possible. The criteria for determining homology can be changed.
For comparison by amino acid sequence, both genomes must be annotated with CDS.
From the result screen, you can zoom in and out, scroll, pick up homologous lines, display arbitrary feature keys, display non-homologous regions, and display a navigation window.
Result images can be output in PDF / PNG / EMF format. The homology list can be output as a file in CSV format.