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Genome Mapping NGS Read Mapping GT 11D Practice Fragment Mapping using Training Data
Genome Mapping NGS Read Mapping GT 11D Practice Fragment Mapping using Training DataGenome Analysis Software Info Site
Official Technology Information Site of in silico biology, inc.
Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
GT 11D Practice Fragment Mapping using Training Data
Practice the fragment mapping operation using training data.
Operation
Start GT.
Right click mouse over "last_mapping" node.
The menu will be displayed.
Select "New Analysis Node -> Fragment Mapping".
The Fragment Mapping dialog will be displayed.
Click Add ... and select a file naeded *demo.fasta from the demo data (training data).
Check all check boxes.
Click Run.
An execution confirmation message is displayed.
Click "Yes (Y)".
Execution is started and a progress message is displayed during execution.
When the mapping process is complete, a completion message is displayed.
Click "OK".
The node of this mapping result is created at the top of Analysis node of last_mapping node.
Right-click on the node and select Expand from the displayed menu, or double-click the node.
The bam file node is displayed below the node.
Right-click on the bam file node on the mouse.
The menu will be displayed.
Select "Show Read Alignment".
The Alignment Viewer for viewing and analyzing the mapping result is displayed.
