Genome Analysis Software Info Site

Expression profile Lane style setting dialog. It can be set independently for each lane.

Basis section:

Height text field: Enter the height of the lane as a positive integer value. The unit is pixel.Height text field: Enter the height of the lane as a positive integer value. The unit is pixel.

Type pull-down menu: Select the format of the data. There are two types, Tiling Array Profile and Import Array Data.

Type text field: When Import Array Data is selected, enter the full path of the file storage location.

Rel ... button: Button for starting the file selection dialog.

Strand Forward radio button: When on, only data on the Forward strand will be displayed.

Strand Reverse radio button: When on, only data on Reverse strand is displayed.

Strand Both (Overlay) radio button: When on, data on both strands are overlapped and displayed.

Strand Transparency (0-99) Text field: Specify the transparency of the data to be overlaid. Enter an integer from 0 to 99.

Graph Scale section

Auto radio button: When on, sets the maximum value and minimum value of data in the display range to the upper and lower limit values ​​of the display area.

Center (1-99) Text field: Enter the center line as the distance ratio from the lower limit value to the lane height. Enter an integer from 1 to 99.

Custom radio button: When on, the upper limit, lower limit, and median of the lane can be specified as arbitrary numerical values.

Upper text field: Enter the upper limit value of the lane as a real number.

Center text field: Enter the center line of the lane as a real number.

Lower text field: Enter the lower limit value of the lane as a real number.

Map * Text field: Multiply the profile value displayed on the lane by the entered value. Enter a real number greater than zero.

Upper Line check box: When checked, the upper line of the lane will be displayed.

Lower Line check box: When checked, displays the lower limit line of the lane.

Center Line check box: If checked, displays the center line of the lane.

Value section

Read Number radio button: When on, the expression level is displayed as it is.

Log 2 radio button: When on, the expression level is displayed in base 2 logarithm.

Log 10 Radio Button: When on, displays the expression level in base 10 logarithm.

SD * text field: Enter the coefficient multiplied by the standard deviation as a positive real number.

Data section

Define operations between up to three data series and display the value of the calculation formula.

Section 1 pull-down menu: b Select from the list of loaded array data.

* First term coefficient text field: First term Enter the coefficient multiplied by the data series as a real number.

Operator between 1st and 2nd terms pull-down menu: Select the first term data series and second term data series operators.

Section 2 pull-down menu: Select from the list of loaded array data.

* 2nd coefficient coefficient text field: 2nd term Enter the coefficient multiplied by the data series as a real number.

From 2nd to 3rd operators Operator pull-down menu: Select the first term data series and second term data series operators.

Paragraph 3 Pull-down menu: Select from the list of loaded array data.

* Paragraph 3 Coefficient text field: First term Enter the coefficient multiplied by the data series as a real number.

Mean check box: If checked, the operator setting in the above expression is ignored and the average value of the selected series is displayed.

Data Correction Setting ... Pull-down menu: Sets the data correction method for the value of the equation.

Graph ... button: Displays the value of an arithmetic expression as a histogram.

CSV ... button: Save the value of the formula as a CSV format file.

View section

Label check box: If checked, displays the data series file name as a label.

Bar check box: When checked, a bar graph will be displayed.

Invert Lower Graph checkbox: Selectable when Strand of Basic section is Reverse. When checked, the maximum and minimum values ​​are displayed in reverse.

Point checkbox: Points to each value of the data series.

Mean Line check box: If checked, connect the average value of the data series with a polygonal line.

SD Line check box: When checked, connect the standard deviation of the data series with a polygonal line.

Abnormal Value check box: If checked, it will be displayed including abnormal values.

Saturated Value check box: When checked, displays saturated value.

Thin Out check box: When checked, it will make one graph rendered on the same pixel.

Max radio button: When on, displays the maximum value among the values ​​drawn on the same pixel.

Min radio button: When on, displays the minimum value among the values ​​drawn on the same pixel.

Average radio button: When on, displays the average value of the values ​​drawn on the same pixel.


Set button: Confirms the change contents.

Cancel button: Cancel the setting contents.

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