Genome Analysis Software Site

in silico biology, inc.

IMC G1C External Annotation Server Setting Description

Description of the external server settings tab pane

Configure the Linux server installed externally.

It is mainly used for automatic annotation.

Hostname: Sets the external server name.

User: Sets the login user name to the external server.

Password: Set the login password to the external server.

Timeout (sec): Set the waiting time until response

Connection Test ...: Performs a connection test to an external server.

NCBI blast Path: Set the path to NCBI Blast

Blast DB Directory: Set the directory where the Blast database is stored

Metagene Annotator Path: Prokaryotic gene prediction software

Set path to Metagene Annotator

AUGUSTUS Path: Eukaryotic gene prediction software

Set path to AUGUSTUS execution

AUGUSTUS Config Path: Sets the path to AUGUSTUS config

tRNAScan Path: Set the path to tRNA prediction software tRNAScan-SE.

RNAmmer Path: Sets the path to rRNA prediction software rRNA mmer.

Memory Size for Annotation (MB): Specify the memory size to be assigned to the annotation.

Apply: Apply the setting.

Close: Closes the setting dialog without applying the setting.

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