Function Menu
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Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
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Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
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- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
Dongle License (HW Key)
IMC Primer
Terminate IMC
Toolbox
Feature Key Search
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Priming Site Search
Batch Homology Search
Restriction Enzyme
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PCR Reaction
Ligation
Gel Electrophoresis
Fragment Modification
DNA Content Analysis
Codon Analysis
ORF Analysis
Database Management
Reverse Complement
IMC O03A DotPlot Basic Operation
This function is implemented in the following edition.
IMCGE
, AE
, DS
Data to be prepared:
To run DotPlot, two genomic base sequences are required.
Available data formats are GenBank / EMBL or FastA format.
Load the comparison source genome into the current sequence directory and make it the current sequence.
Load the other genome to be compared into the current reference directory.
Select Genome Analysis -> Compare -> DotPlot from the menu.
Or click the DotPlot button in the toolbox.
An execution confirmation message is displayed.
Click "Yes (Y)".
The DotPlot Run dialog is displayed.
In the list at the top, all the genome sequences loaded in the current reference directory are displayed.
In the lower list, the filling color by condition for each dot is set.
Select one from the top reference genome sequence. This genomic sequence is compared with the genomic sequence of the current feature map.
Click Run.
Execution of DotPlot is started and a progress message is displayed.
When execution is completed, the DotPlot result dialog is displayed.
Drag mouse over the plot and zoom in on the rectangular area when releasing it, enlarged display is possible.
The plot is zoomed in.
Click the back button to return to full view.
