in silico Assembler is de novo Assembler.
Assemble DNA fragments of 50 bp or more.
Reads from NGS can also be assembled (up to about 1 million reads. For larger size use Velvet etc).
In the preprocessing, limited number of processing, designation of minimum QV, maximum N bases can be limited.
The assembly result is stored in the result storage directory specified before execution.
There is a method of mechanically combining a large number of contig sequences generated as assembly results into one sequence before loading.
Assembly results are usually saved as multiple Contig files, so loading as they are divided into a number of fragment files and loaded.
If there are many fragments, there is a method of specifying all of them and not directly loading, generating and loading a multiple GenBank format file mechanically combining them.
To load assembly results into the main feature map, use IMC's normal sequence loading method.