Genome Analysis Software Info Site

In this tab pane you can change the settings for the local genome rearrangement map.

Amino Acid Section

View Color of Match A.A. Sequence Color Toggle Radio Button: When on, displays the amino acid residue characters displayed on the sequence lane in color.

View Color of Match A.A. Sequence Gray Toggle Radio Button: When on, displays the amino acid residue characters displayed on the sequence lane in grayscale.

Only View Mismatch A. A. Sequence check box: When checked, displays the amino acid residue letters only if the amino acid residues of the two genomes being compared match. When unchecked, all amino acid residues are displayed.

Match Mark input field: Specify the character to be used in the event that the amino acid residue matches.

Match Mark color box: Specify the character color to be used in the event that amino acid residues match.

Match Mark input field: Specify the character to be used in the event that the amino acid residue does not match.

Match Mark color box: Specify the character color to use when the amino acid residues do not match.

Nucleotide section

View Color of Match Nucleotide Color Toggle Radio Button: When on, the base letters displayed on the sequence lane are displayed in color.

View Color of Match Nucleitide Gray Toggle Radio Button: When on, displays the base letters displayed on the sequence lane in grayscale.

Only view Mismatch Nucleotide and Mask Match Nucleotide check box: When checked, the base letters are displayed only when the bases of the two genomes to be compared match. When unchecked, all base letters are displayed.

Input field: If the bases do not match, specify the character to use during that time.

Color Box: Specify the character color to be used if the bases do not match.

For Feature Setting common operation buttons, please click here.