Genome Analysis Software Site

Official Technology Information Site of in silico biology, inc.

IMC E03E Pattern Search Using Unregistered Pattern

Pattern search is performed with unregistered patterns.

Copy the base sequence you want to search to the clipboard in advance.


  1. Searches the pattern on the base sequence displayed in the feature map with the base sequence pattern on the clipboard.
  2. Click the “Pattern Search” button.
  3. The “Pattern Search” Dialog is displayed.
  4. Place your cursor in the "Pattern" input field and press "Ctrl-V".
  5. The base sequence is pasted from the clipboard to the “Pattern” input field.
  6. Click the "Search" button at the bottom of the "Pattern Search" Dialog.
  7. A search is performed. A “Pattern Matching ..” progress message is displayed during execution, and when completed, the “Pattern Match Sites” window is displayed.
  8. On the left side, the automatically generated name is given as the found pattern name.
  9. Check the list on the left.
  10. The location information on the feature map where the searched pattern exists is displayed on the right side.
  11. Click on a specific row.
  12. The feature map displays its position, and the matching base sequence is displayed in blue.