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Genome Comparison Gene Cluster Alignment IMC O10 How to Draw Gene Cluster Alignment
Genome Comparison Gene Cluster Alignment IMC O10 How to Draw Gene Cluster AlignmentGenome Analysis Software Info Site
Official Technology Information Site of in silico biology, inc.
Function Menu
License Activation
Function Overviews and Basic Operation
Work Bench
Feature Map- Feature Key and Feature
Management and Operations of Feature Keys- Attributes of Feature Keys
- IMC Original Set Feature Keys
- Types and Roles of Qualifiers
- IMC Original Set Qualifiers
- View and Edit Qualifiers
- Feature Position on Genome Sequence
- Feature Fragmentation
- Feature Synthesis
- Feature Fusion
- Feature Operators
- Link and Refer on Feature
- Feature Mapping
- Register, Edit, Delete Feature
- Feature Appearance
- Join and Delete Position
- Feature Categorization and Presentation
- Import Feature
- Export Feature
- Numbering of Feature
Sequence and Data Input and Output- Genome / Sequence Viewer / Editor
GenBank EMBL Viewer
Sequence Viewer
Annotation Viewer- Multiple Genome Viewer (Linear Map)
Circular Genome Viewer-Designer
Plasmid Map Viewer-Designer
Trace Viewer - Editor- Labeling and Coloring
- Description Window
- Amino Acid Sequence Profile Viewer
- Multiple Alignment Viewer
Phylogenetic Tree Viewer- GT Alignment Viewer
- Restriction Enzyme Map Window
Search Sequence and Annotation- Cloning
- Sequencing
- Gene and Genome Sequence Analysis
- Genome Annotation
Genome Comparison- Multiple Aligment
- Phylogenetic Tree
- Multiple Linear Genome Map
- Gene Cluster Alignment
Multiple Circular Genome Map
Dot Plot Analysis
Venn Diagram Analysis- Core Genome Analysis
- Global Genome Rearrangement Analysis
- Local Genome Rearrangement Analysis
- Mutation Analysis
- Enzyme Alignment by EC Number
- Unique Region Analysis
- Genome Mapping
- Expression Analysis
- Metabolome Analysis
- Genome Design
Settings- Tools
- Window and Dialog Description
- What is "Do It Yourself" Genome Analysis Software?
- Functions and Operations of GenomeTraveler
IMC O10 How to Draw Gene Cluster Alignment
How to perform gene cluster alignment between closely related genomes.
- This function can be used with the following editions.
- IMC GE
AE
DS
Operation
- Load the annotated (gene-identified) hall genome nucleotide sequence that you want to compare to the current reference directory.
- Right-click on the genes of interest (CDS) of one genome of the reference feature map.
- Select "Gene Cluster Alignment" from the displayed menu.
- The execution dialog is displayed. Click RUN.
- An execution confirmation message is displayed.
- Click "Yes".
- When execution is started and the process ends, the Binary Best Hit List window will be displayed, and homologous genes around the reference gene on the reference feature map will be joined by bands.
- Even if you scroll through one genome, the band moves accordingly, but the topology does not change.
- Even if you zoom, it is the same.
