Genome Analysis Software Site

in silico biology, inc.

IMC W703 Reference Map Setting Dialog Description

In the Reference Map tab pane, the scroll width of the Reference Genome Map (aka, Linear Genome Map, Multiple Genome Viewer), scale interval, grid line, layout, height of lane, offset value, display / hide setting for each feature key , Label display settings can be customized.

Map Scale Parameters section:

Sets the left / right scroll unit, scale setting, and grid line display of the reference genome map.

Map Shift Left pull-down menu: Select the horizontal scroll width of the reference genome map from the pull-down menu. Select the left scroll width when the horizontal size of the reference genome map is 1. With one mouse click, 1 scrolls the same width, ½ scrolls the width of 1/2 and 1/4 scrolls a quarter width.

Map Shift Right pull-down menu: From the pull-down menu Select the horizontal scroll width of the reference genome map. Select the right scroll width when the horizontal size of the reference genome map is 1. With one mouse click, 1 scrolls the same width, 1/2 is half width, 1/4 is right quarter width.

Interval of Scale Auto radio button: Turning on the radio radio button automatically sets the scale interval of the reference genome map.

Interval of Scale Custom Radio Button: By turning on the Custom radio button, you can set the scale interval of the reference genome map as desired.

Interval of Scale Custom Input field: Custom In the input field, enter the scale interval of the reference genome map directly. You can enter any positive integer with bp.

Show Grid Line check box: When checked, displays the grid (dotted line) in the reference genome map.

Feature Key Arrangement Policy section:

Sets the method of arranging features in the reference genome map.

Two Lane radio button: When checked, the features of each genomic sequence loaded in the current reference directory are displayed in two lines, the forward chain and the reverse complementary strand. The next radio button is toggled.

One Lane radio button: When on, features on each genomic sequence loaded in the current reference directory are displayed together on a single line, both features on the forward and reverse complementary strands.

View section:

Filename check box: When checked, the file name of the genome sequence displayed in each lane of the reference genome map is displayed.

Height input field: Enter the height of one genome sequence lane of the reference genome map. The unit is pixel.

Y Offset input field: Enter the vertical offset value of the genomic sequence lane of the reference genome map. The unit is pixel.

Feature key setting section:

Make display setting of the feature displayed on the reference genome map. Display / hide checkbox: When checked, the features belonging to that feature key will be displayed in the feature lane of the reference genome map.

Permenent Label check box: When checked, even if the LB button is off, the feature label is displayed.

Labelling Qualifier pull-down menu: Specify the Qualifier to use for each feature label on the reference genome map.

Full-Text Search the Site

(Under Construction)

Recent Updates (Solution)