Genome Analysis Software Site

in silico biology, inc.

IMC B3H5 Operations of Frame Lane

Implemented Products · Edition

  • IMC EE / SE / GE / AE / DS

Definition

  • Frame Lane is a lane displaying areas where stop codons do not appear consecutively for each of six frames.

  • The area where the green area becomes the CDS candidate.

 

Functional overview

  • Frame Lane indicates an area where stop codon to stop codon is equal to or more than the specified codon number for every 6 frames.
  • Frame Lane can be moved to any position in Feature Map.
  • Display / non-display of Frame Lane can be switched with one click of the button.

Operating procedure

Add a frame lane to the current feature map

  1. Add the frame lane to the feature map Add the array you want to display to the main current array.
  2. From the menu, select Settings -> Layout Style ... or click Layout Style on the toolbox.
    • The Layout Style dialog will be displayed.
  3. Click Add at the bottom of the dialog.
    • The Lane Style dialog will be displayed.
  4. Pull down the Lane Type and select "Stop to Stop". Then click Set.
    • The Stop to Stop (Frame) lane will be added to the bottom of the Lane list.
    • If you want to move Lane, check it and click Up or Down in succession.
  5. Click Apply and click Close.

Temporarily hide the frame lane

  1. On the Layout Style dialog, click the eyeball icon in the Stop to Stop lane.
    • The frame lane is hidden.

Delete frame lane

  1. In the Layout Style dialog, check the check box of Stop to Stop lane.
  2. Click Apply.
  3. If you want to save this layout style, click Save the Style ..., enter the style name and click Set. ,

Changing the base length between stop codons to be displayed

  1. From the menu, click the Settings -> Sequence Lane tab.

 

  1. Codon Setting group Show Area that Stop Codon is not Found within specified xx bases Change the numeric value of xxx bp to another numeric value of multiples of 3 and click the color box to change the color Then click Apply.

Full-Text Search the Site

(Under Construction)

Recent Updates (Solution)