Genome Analysis Software Site

in silico biology, inc.

GT W801 Commands Tab Pane

This is a tab pane for registering external commands executed by GT.

CBRC LAST: Specify the directory that stores the execution program of LAST which is homology search software developed by CBRC.

CBRC SlideSort: Specify the directory where SlideSort executable program which is high-speed homology analysis software developed by CBRC is stored.

EMBL ClustalW: Specify the executable file of ClustalW developed by EBI.

EMBL - EBI Velvet: Specify the executable file of the NGS assembler Velvet developed by EMBL - EBI.

EMBL - EBI OASES: Specify the executable file of the NGS assembler OASES developed by EMBL - EBI.

Quality Checker: Specify the executable file of the Quality Check program of NGS Read.

NCBI BLAST: Specify the directory where BLAST executable files developed by NCBI are stored.

NCBI SRA Toolkit: Specify the directory that contains the executable file of the SRA Toolkit developed by NCBI.

SAMtools: Specify the executable file of SAMtools.

UWSC Shuffle Seqs: Specify the executable file of Shuffle Seqs developed by UWSC.

Poretools: Specify the executable file for Poretools for Nanopore.

Canu: Specify the executable file of Assembler Canu for Nanopore.

Minimap 2: Specify the executable file of software Minimap 2 for Nanopore.

Miniasm: Specify the executable file of Nanopore assembler Miniasm.

Racon: Specify the executable file of Racon for Nanopore.

GNU Wget for Downloading: Specify the execution file of Wget used for downloading.

"Apply": Applies the entered parameters.

"Close": Closes the dialog without applying the parameters you entered.

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